IL_6Q8Y_011

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6Q8Y|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.1799

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|2|U|144
6Q8Y|1|2|A|145
6Q8Y|1|2|U|146
6Q8Y|1|2|A|147
6Q8Y|1|2|A|148
6Q8Y|1|2|C|149
*
6Q8Y|1|2|G|165
6Q8Y|1|2|C|166
6Q8Y|1|2|U|167
6Q8Y|1|2|A|168
6Q8Y|1|2|A|169
6Q8Y|1|2|U|170
6Q8Y|1|2|A|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A