IL_6Q8Y_086
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_086 not in the Motif Atlas
- Geometric match to IL_4V88_474
- Geometric discrepancy: 0.1665
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6Q8Y|1|2|A|1678
6Q8Y|1|2|G|1679
6Q8Y|1|2|G|1680
6Q8Y|1|2|A|1681
6Q8Y|1|2|U|1682
*
6Q8Y|1|2|A|1719
6Q8Y|1|2|G|1720
6Q8Y|1|2|A|1721
6Q8Y|1|2|A|1722
6Q8Y|1|2|U|1723
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L24-A
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-A
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