IL_6Q8Y_087
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 6Q8Y|1|BS|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_087 not in the Motif Atlas
- Homologous match to IL_8C3A_002
- Geometric discrepancy: 0.1232
- The information below is about IL_8C3A_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6Q8Y|1|BQ|C|7
6Q8Y|1|BQ|C|8
*
6Q8Y|1|BS|G|150
6Q8Y|1|BS|C|151
6Q8Y|1|BS|G|152
Current chains
- Chain BQ
- 25S ribosomal RNA
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AQ
- 60S ribosomal protein L15-A
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