IL_6Q8Y_096

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_096 not in the Motif Atlas

Homologous match to IL_8C3A_012

Geometric discrepancy: 0.5865

The information below is about IL_8C3A_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6Q8Y|1|BQ|U|177
6Q8Y|1|BQ|U|178
*
6Q8Y|1|BQ|A|238
6Q8Y|1|BQ|G|239
6Q8Y|1|BQ|U|240
6Q8Y|1|BQ|G|241

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A