IL_6Q8Y_108

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_108 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0837

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6Q8Y|1|BQ|G|725
6Q8Y|1|BQ|G|726
6Q8Y|1|BQ|G|727
6Q8Y|1|BQ|G|728
*
6Q8Y|1|BQ|U|741
6Q8Y|1|BQ|G|742
6Q8Y|1|BQ|C|743
6Q8Y|1|BQ|A|744
6Q8Y|1|BQ|C|745

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BB

60S ribosomal protein L18-A