IL_6Q8Y_113
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|933, 6Q8Y|1|BQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_113 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0641
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Q8Y|1|BQ|G|805
6Q8Y|1|BQ|A|806
6Q8Y|1|BQ|A|807
6Q8Y|1|BQ|A|808
6Q8Y|1|BQ|G|809
*
6Q8Y|1|BQ|C|931
6Q8Y|1|BQ|U|932
6Q8Y|1|BQ|A|933
6Q8Y|1|BQ|G|934
6Q8Y|1|BQ|U|935
6Q8Y|1|BQ|A|936
6Q8Y|1|BQ|G|937
6Q8Y|1|BQ|C|938
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- 60S ribosomal protein L4-A
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