IL_6Q8Y_115

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_115 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0968

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Q8Y|1|BQ|U|834
6Q8Y|1|BQ|G|835
6Q8Y|1|BQ|A|836
6Q8Y|1|BQ|A|837
6Q8Y|1|BQ|G|838
*
6Q8Y|1|BQ|U|855
6Q8Y|1|BQ|G|856
6Q8Y|1|BQ|G|857
6Q8Y|1|BQ|A|858
6Q8Y|1|BQ|G|859

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain BF

60S ribosomal protein L19-A