IL_6Q8Y_136
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|C|1196, 6Q8Y|1|BQ|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_136 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0844
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|G|1194
6Q8Y|1|BQ|A|1195
6Q8Y|1|BQ|C|1196
6Q8Y|1|BQ|A|1197
6Q8Y|1|BQ|C|1198
6Q8Y|1|BQ|C|1199
6Q8Y|1|BQ|A|1200
6Q8Y|1|BQ|C|1201
6Q8Y|1|BQ|A|1202
6Q8Y|1|BQ|A|1203
6Q8Y|1|BQ|A|1204
6Q8Y|1|BQ|A|1205
*
6Q8Y|1|BQ|U|1299
6Q8Y|1|BQ|G|1300
6Q8Y|1|BQ|A|1301
6Q8Y|1|BQ|A|1302
6Q8Y|1|BQ|A|1303
6Q8Y|1|BQ|A|1304
6Q8Y|1|BQ|U|1305
6Q8Y|1|BQ|G|1306
6Q8Y|1|BQ|G|1307
6Q8Y|1|BQ|A|1308
6Q8Y|1|BQ|U|1309
6Q8Y|1|BQ|G|1310
6Q8Y|1|BQ|G|1311
6Q8Y|1|BQ|C|1312
6Q8Y|1|BQ|G|1313
6Q8Y|1|BQ|C|1314
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain AU
- 60S ribosomal protein L16-A
- Chain BA
- 60S ribosomal protein L3
- Chain BD
- 60S ribosomal protein L10
- Chain BK
- 60S ribosomal protein L33-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: