IL_6Q8Y_146
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|1588, 6Q8Y|1|BQ|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_146 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0828
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6Q8Y|1|BQ|C|1532
6Q8Y|1|BQ|U|1533
6Q8Y|1|BQ|A|1534
6Q8Y|1|BQ|A|1535
6Q8Y|1|BQ|G|1536
*
6Q8Y|1|BQ|C|1585
6Q8Y|1|BQ|G|1586
6Q8Y|1|BQ|A|1587
6Q8Y|1|BQ|A|1588
6Q8Y|1|BQ|A|1589
6Q8Y|1|BQ|G|1590
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AL
- 60S ribosomal protein L39
- Chain AW
- 60S ribosomal protein L2-A
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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