IL_6Q8Y_150

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|U|1820, 6Q8Y|1|BQ|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_150 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2217

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6Q8Y|1|BQ|G|1623
6Q8Y|1|BQ|G|1624
*
6Q8Y|1|BQ|U|1819
6Q8Y|1|BQ|U|1820
6Q8Y|1|BQ|U|1821
6Q8Y|1|BQ|C|1822

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BN

60S ribosomal protein L34-A