IL_6Q8Y_156

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_156 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0778

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6Q8Y|1|BQ|U|1694
6Q8Y|1|BQ|U|1695
6Q8Y|1|BQ|A|1696
6Q8Y|1|BQ|A|1697
6Q8Y|1|BQ|C|1698
*
6Q8Y|1|BQ|G|1747
6Q8Y|1|BQ|G|1748
6Q8Y|1|BQ|A|1749
6Q8Y|1|BQ|A|1750
6Q8Y|1|BQ|G|1751
6Q8Y|1|BQ|A|1752

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A