IL_6Q8Y_157

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_157 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1335

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6Q8Y|1|BQ|U|1702
6Q8Y|1|BQ|U|1703
6Q8Y|1|BQ|A|1704
6Q8Y|1|BQ|U|1705
6Q8Y|1|BQ|C|1706
6Q8Y|1|BQ|A|1707
*
6Q8Y|1|BQ|U|1737
6Q8Y|1|BQ|C|1738
6Q8Y|1|BQ|U|1739
6Q8Y|1|BQ|U|1740
6Q8Y|1|BQ|A|1741
6Q8Y|1|BQ|U|1742
6Q8Y|1|BQ|G|1743

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain BN

60S ribosomal protein L34-A