IL_6Q8Y_162

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_162 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0746

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|A|1901
6Q8Y|1|BQ|G|1902
6Q8Y|1|BQ|U|1903
6Q8Y|1|BQ|C|1904
6Q8Y|1|BQ|G|1905
6Q8Y|1|BQ|G|1906
*
6Q8Y|1|BQ|C|2333
6Q8Y|1|BQ|U|2334
6Q8Y|1|BQ|G|2335
6Q8Y|1|BQ|U|2336

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3