IL_6Q8Y_172

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_172 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1261

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|BQ|U|2211
6Q8Y|1|BQ|C|2212
6Q8Y|1|BQ|A|2213
6Q8Y|1|BQ|A|2214
6Q8Y|1|BQ|A|2215
6Q8Y|1|BQ|G|2216
6Q8Y|1|BQ|U|2217
*
6Q8Y|1|BQ|A|2228
6Q8Y|1|BQ|A|2229
6Q8Y|1|BQ|C|2230
6Q8Y|1|BQ|C|2231
6Q8Y|1|BQ|A|2232
6Q8Y|1|BQ|A|2233
6Q8Y|1|BQ|G|2234

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A

Chain m

Transfer RNA; tRNA