IL_6Q8Y_181
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|2522, 6Q8Y|1|BQ|G|2585, 6Q8Y|1|BQ|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_181 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1197
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|A|2520
6Q8Y|1|BQ|U|2521
6Q8Y|1|BQ|G|2522
6Q8Y|1|BQ|A|2523
6Q8Y|1|BQ|A|2524
6Q8Y|1|BQ|G|2525
6Q8Y|1|BQ|C|2526
*
6Q8Y|1|BQ|G|2584
6Q8Y|1|BQ|G|2585
6Q8Y|1|BQ|G|2586
6Q8Y|1|BQ|U|2587
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AW
- 60S ribosomal protein L2-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: