IL_6Q8Y_198

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|A|3142, 6Q8Y|1|BQ|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_198 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1091

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6Q8Y|1|BQ|C|3004
6Q8Y|1|BQ|A|3005
6Q8Y|1|BQ|A|3006
6Q8Y|1|BQ|U|3007
*
6Q8Y|1|BQ|A|3139
6Q8Y|1|BQ|G|3140
6Q8Y|1|BQ|A|3141
6Q8Y|1|BQ|A|3142
6Q8Y|1|BQ|C|3143
6Q8Y|1|BQ|G|3144

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3