IL_6Q8Y_202

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6Q8Y|1|BQ|U|3056, 6Q8Y|1|BQ|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_202 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1136

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6Q8Y|1|BQ|U|3054
6Q8Y|1|BQ|U|3055
6Q8Y|1|BQ|U|3056
6Q8Y|1|BQ|U|3057
6Q8Y|1|BQ|U|3058
6Q8Y|1|BQ|G|3059
*
6Q8Y|1|BQ|C|3084
6Q8Y|1|BQ|G|3085
6Q8Y|1|BQ|A|3086
6Q8Y|1|BQ|A|3087
6Q8Y|1|BQ|G|3088

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A