IL_6Q8Y_204

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_204 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0843

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6Q8Y|1|BQ|A|3103
6Q8Y|1|BQ|U|3104
6Q8Y|1|BQ|U|3105
6Q8Y|1|BQ|A|3106
6Q8Y|1|BQ|U|3107
*
6Q8Y|1|BQ|A|3127
6Q8Y|1|BQ|G|3128
6Q8Y|1|BQ|A|3129
6Q8Y|1|BQ|A|3130
6Q8Y|1|BQ|U|3131

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A