IL_6Q8Y_212

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_212 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1265

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6Q8Y|1|BQ|C|3235
6Q8Y|1|BQ|U|3236
6Q8Y|1|BQ|U|3237
6Q8Y|1|BQ|G|3238
*
6Q8Y|1|BQ|C|3249
6Q8Y|1|BQ|U|3250
6Q8Y|1|BQ|U|3251
6Q8Y|1|BQ|G|3252

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A