IL_6Q8Y_217

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6Q8Y|1|BQ|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_217 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.078

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|BQ|U|3332
6Q8Y|1|BQ|G|3333
6Q8Y|1|BQ|U|3334
6Q8Y|1|BQ|A|3335
6Q8Y|1|BQ|A|3336
6Q8Y|1|BQ|G|3337
*
6Q8Y|1|BQ|C|3367
6Q8Y|1|BQ|U|3368
6Q8Y|1|BQ|G|3369
6Q8Y|1|BQ|A|3370
6Q8Y|1|BQ|G|3371

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A