IL_6Q8Y_221
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CU*AAG
- Length
- 5 nucleotides
- Bulged bases
- 6Q8Y|1|BR|A|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_221 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.1099
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6Q8Y|1|BR|C|15
6Q8Y|1|BR|U|16
*
6Q8Y|1|BR|A|63
6Q8Y|1|BR|A|64
6Q8Y|1|BR|G|65
Current chains
- Chain BR
- 5S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain BD
- 60S ribosomal protein L10
- Chain BI
- 60S ribosomal protein L5
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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