IL_6Q8Y_228
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_228 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.091
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BS|A|44
6Q8Y|1|BS|C|45
6Q8Y|1|BS|G|46
6Q8Y|1|BS|C|47
6Q8Y|1|BS|A|48
6Q8Y|1|BS|G|49
6Q8Y|1|BS|C|50
6Q8Y|1|BS|G|51
6Q8Y|1|BS|A|52
6Q8Y|1|BS|A|53
6Q8Y|1|BS|A|54
6Q8Y|1|BS|U|55
6Q8Y|1|BS|G|56
6Q8Y|1|BS|C|57
6Q8Y|1|BS|G|58
6Q8Y|1|BS|A|59
6Q8Y|1|BS|U|60
6Q8Y|1|BS|A|61
6Q8Y|1|BS|C|62
6Q8Y|1|BS|G|63
6Q8Y|1|BS|U|64
*
6Q8Y|1|BS|A|96
6Q8Y|1|BS|A|97
6Q8Y|1|BS|U|98
6Q8Y|1|BS|C|99
6Q8Y|1|BS|U|100
Current chains
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain BP
- 60S ribosomal protein L35-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: