IL_6Q8Y_229
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 6Q8Y|1|BS|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_229 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.1055
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6Q8Y|1|BS|U|64
6Q8Y|1|BS|A|65
6Q8Y|1|BS|A|66
*
6Q8Y|1|BS|U|93
6Q8Y|1|BS|C|94
6Q8Y|1|BS|G|95
6Q8Y|1|BS|A|96
Current chains
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain BP
- 60S ribosomal protein L35-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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