IL_6Q95_022

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_022 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6Q95|1|1|G|738
6Q95|1|1|G|739
6Q95|1|1|U|740
6Q95|1|1|G|741
*
6Q95|1|1|C|756
6Q95|1|1|U|757
6Q95|1|1|C|758

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain d

50S ribosomal protein L34