IL_6Q95_025

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6Q95|1|1|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_025 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.2707

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6Q95|1|1|C|844
6Q95|1|1|G|845
6Q95|1|1|C|846
*
6Q95|1|1|G|931
6Q95|1|1|G|932
6Q95|1|1|A|933
6Q95|1|1|G|934

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L30