IL_6Q95_026

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_026 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.1874

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|1|C|846
6Q95|1|1|U|847
6Q95|1|1|G|848
6Q95|1|1|A|849
6Q95|1|1|C|850
*
6Q95|1|1|G|927
6Q95|1|1|G|928
6Q95|1|1|U|930
6Q95|1|1|G|931

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L30