3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUAAGUG*CUUAAG
Length
13 nucleotides
Bulged bases
6Q95|1|1|U|1142
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_037 not in the Motif Atlas
Geometric match to IL_4WF9_039
Geometric discrepancy: 0.2055
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.6
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
6

Unit IDs

6Q95|1|1|C|1018
6Q95|1|1|U|1019
6Q95|1|1|A|1020
6Q95|1|1|A|1021
6Q95|1|1|G|1022
6Q95|1|1|U|1023
6Q95|1|1|G|1024
*
6Q95|1|1|C|1140
6Q95|1|1|U|1141
6Q95|1|1|U|1142
6Q95|1|1|A|1142|||A
6Q95|1|1|A|1143
6Q95|1|1|G|1144

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain F
50S ribosomal protein L6
Chain J
50S ribosomal protein L13
Chain f
50S ribosomal protein L36

Coloring options:


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