IL_6Q95_056

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_056 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1289

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6Q95|1|1|A|1469
6Q95|1|1|G|1470
6Q95|1|1|A|1471
6Q95|1|1|A|1472
6Q95|1|1|G|1473
*
6Q95|1|1|U|1518
6Q95|1|1|G|1519
6Q95|1|1|G|1520
6Q95|1|1|U|1523

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains