IL_6Q95_068

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6Q95|1|1|G|1801, 6Q95|1|1|G|1816, 6Q95|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_068 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.097

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6Q95|1|1|U|1798
6Q95|1|1|G|1799
6Q95|1|1|C|1800
6Q95|1|1|G|1801
6Q95|1|1|A|1802
6Q95|1|1|A|1803
6Q95|1|1|C|1804
*
6Q95|1|1|G|1813
6Q95|1|1|G|1814
6Q95|1|1|A|1815
6Q95|1|1|G|1816
6Q95|1|1|G|1817
6Q95|1|1|U|1818
6Q95|1|1|A|1819
6Q95|1|1|U|1820
6Q95|1|1|A|1821

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2