IL_6Q95_086

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_086 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1214

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6Q95|1|1|C|2350
6Q95|1|1|G|2351
6Q95|1|1|A|2352
6Q95|1|1|G|2353
*
6Q95|1|1|C|2364
6Q95|1|1|G|2365
6Q95|1|1|A|2366
6Q95|1|1|G|2367

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S ribosomal protein L27

Chain e

50S ribosomal protein L35