IL_6Q95_087

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

6Q95|1|1|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_087 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3095

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6Q95|1|1|U|2401
6Q95|1|1|C|2402
6Q95|1|1|C|2403
*
6Q95|1|1|G|2414
6Q95|1|1|G|2415

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35