IL_6Q95_088

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_088 not in the Motif Atlas

Homologous match to IL_7RQB_091

Geometric discrepancy: 0.14

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6Q95|1|1|A|2453
6Q95|1|1|G|2454
*
6Q95|1|1|C|2498
6Q95|1|1|C|2499
6Q95|1|1|U|2500

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain 6

Nascent peptide MET-ALA

Chain C

50S ribosomal protein L3

Chain W

50S ribosomal protein L27