IL_6Q95_095
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CG*CACG
- Length
- 6 nucleotides
- Bulged bases
- 6Q95|1|1|A|2572, 6Q95|1|1|C|2573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_095 not in the Motif Atlas
- Homologous match to IL_7RQB_098
- Geometric discrepancy: 0.1224
- The information below is about IL_7RQB_098
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71530.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6Q95|1|1|C|2512
6Q95|1|1|G|2513
*
6Q95|1|1|C|2571
6Q95|1|1|A|2572
6Q95|1|1|C|2573
6Q95|1|1|G|2574
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 6
- Nascent peptide MET-ALA
- Chain C
- 50S ribosomal protein L3
- Chain W
- 50S ribosomal protein L27
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