IL_6Q95_099

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_099 not in the Motif Atlas

Geometric match to IL_4V9F_106

Geometric discrepancy: 0.3085

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6Q95|1|1|C|2652
6Q95|1|1|U|2653
6Q95|1|1|A|2654
6Q95|1|1|G|2655
6Q95|1|1|U|2656
6Q95|1|1|A|2657
6Q95|1|1|C|2658
*
6Q95|1|1|G|2663
6Q95|1|1|G|2664
6Q95|1|1|A|2665
6Q95|1|1|C|2666
6Q95|1|1|C|2667
6Q95|1|1|G|2668

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6