IL_6Q95_123

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_123 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1499

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6Q95|1|2|G|409
6Q95|1|2|G|410
6Q95|1|2|A|411
6Q95|1|2|A|412
6Q95|1|2|G|413
6Q95|1|2|A|414
6Q95|1|2|A|415
6Q95|1|2|G|416
*
6Q95|1|2|U|427
6Q95|1|2|G|428
6Q95|1|2|U|429
6Q95|1|2|A|430
6Q95|1|2|A|431
6Q95|1|2|A|432
6Q95|1|2|C|433

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain i

30S ribosomal protein S4