IL_6Q95_139

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAG*CGCAGAUACC

Length

17 nucleotides

Bulged bases

6Q95|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_139 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.2976

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|2|G|682
6Q95|1|2|G|683
6Q95|1|2|A|684
6Q95|1|2|G|685
6Q95|1|2|U|686
6Q95|1|2|A|687
6Q95|1|2|G|688
*
6Q95|1|2|C|699
6Q95|1|2|G|700
6Q95|1|2|C|701
6Q95|1|2|A|702
6Q95|1|2|G|703
6Q95|1|2|A|704
6Q95|1|2|U|705
6Q95|1|2|A|706
6Q95|1|2|C|707
6Q95|1|2|C|708

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11