3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
6Q95|1|2|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_144 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.106
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

6Q95|1|2|G|925
6Q95|1|2|G|926
6Q95|1|2|G|927
*
6Q95|1|2|U|1390
6Q95|1|2|U|1391

Current chains

Chain 2
16S RIBOSOMAL RNA

Nearby chains

Chain 9
mRNA

Coloring options:


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