IL_6Q95_148

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUA

Length

33 nucleotides

Bulged bases

6Q95|1|2|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|2|U|1000
6Q95|1|2|A|1001
6Q95|1|2|G|1001|||A
6Q95|1|2|G|1002
6Q95|1|2|G|1003
6Q95|1|2|A|1004
6Q95|1|2|A|1005
6Q95|1|2|C|1006
6Q95|1|2|C|1007
*
6Q95|1|2|G|1022
6Q95|1|2|G|1023
6Q95|1|2|G|1024
6Q95|1|2|U|1025
6Q95|1|2|G|1026
6Q95|1|2|C|1027
6Q95|1|2|C|1028
6Q95|1|2|C|1029
6Q95|1|2|C|1030
6Q95|1|2|G|1030|||A
6Q95|1|2|C|1030|||B
6Q95|1|2|G|1030|||C
6Q95|1|2|A|1030|||D
6Q95|1|2|G|1031
6Q95|1|2|G|1032
6Q95|1|2|G|1033
6Q95|1|2|G|1034
6Q95|1|2|A|1035
6Q95|1|2|G|1036
6Q95|1|2|C|1037
6Q95|1|2|C|1038
6Q95|1|2|C|1039
6Q95|1|2|U|1040
6Q95|1|2|A|1041

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain h

30S ribosomal protein S3