IL_6Q95_162

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_162 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.118

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6Q95|1|2|G|1405
6Q95|1|2|U|1406
6Q95|1|2|C|1407
*
6Q95|1|2|G|1494
6Q95|1|2|U|1495
6Q95|1|2|C|1496

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

SsrA-binding protein

Chain 7

Transfer RNA; tRNA

Chain q

30S ribosomal protein S12