IL_6Q95_168

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGGGAG*CAGG

Length

11 nucleotides

Bulged bases

6Q95|1|2|G|1441, 6Q95|1|2|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|2|C|1439
6Q95|1|2|C|1440
6Q95|1|2|G|1441
6Q95|1|2|G|1442
6Q95|1|2|G|1442|||A
6Q95|1|2|A|1442|||B
6Q95|1|2|G|1443
*
6Q95|1|2|C|1459
6Q95|1|2|A|1460
6Q95|1|2|G|1461
6Q95|1|2|G|1462

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20