IL_6Q95_173
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCCC*GAACAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_173 not in the Motif Atlas
- Homologous match to IL_7A0S_105
- Geometric discrepancy: 0.4356
- The information below is about IL_7A0S_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6Q95|1|3|G|33
6Q95|1|3|U|34
6Q95|1|3|U|35
6Q95|1|3|C|36
6Q95|1|3|C|37
6Q95|1|3|C|38
*
6Q95|1|3|G|44
6Q95|1|3|A|45
6Q95|1|3|A|46
6Q95|1|3|C|47
6Q95|1|3|A|48
6Q95|1|3|C|49
Current chains
- Chain 3
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain a
- 50S ribosomal protein L31
Coloring options: