IL_6Q95_174
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_174 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1161
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6Q95|1|3|C|71
6Q95|1|3|G|72
6Q95|1|3|A|73
6Q95|1|3|U|74
6Q95|1|3|G|75
6Q95|1|3|G|76
6Q95|1|3|U|77
6Q95|1|3|A|78
6Q95|1|3|C|79
*
6Q95|1|3|G|98
6Q95|1|3|G|99
6Q95|1|3|A|100
6Q95|1|3|G|101
6Q95|1|3|A|102
6Q95|1|3|G|103
6Q95|1|3|U|104
6Q95|1|3|A|105
6Q95|1|3|G|106
Current chains
- Chain 3
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L30
Coloring options: