IL_6Q95_177

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGAGG*CGUAGG

Length

12 nucleotides

Bulged bases

6Q95|1|4|G|306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|4|C|29
6Q95|1|4|C|30
6Q95|1|4|G|31
6Q95|1|4|A|32
6Q95|1|4|G|33
6Q95|1|4|G|34
*
6Q95|1|4|C|305
6Q95|1|4|G|306
6Q95|1|4|U|307
6Q95|1|4|A|308
6Q95|1|4|G|309
6Q95|1|4|G|310

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain I

50S RIBOSOMAL PROTEIN L10 AND L11

Chain x

30S ribosomal protein S19