IL_6Q95_206

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGUGGCUGCG*CGUAGAGGCCCGC

Length

24 nucleotides

Bulged bases

6Q95|1|4|C|44, 6Q95|1|4|G|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q95|1|4|G|35
6Q95|1|4|C|36
6Q95|1|4|G|37
6Q95|1|4|U|38
6Q95|1|4|G|39
6Q95|1|4|G|40
6Q95|1|4|C|41
6Q95|1|4|U|42
6Q95|1|4|G|43
6Q95|1|4|C|44
6Q95|1|4|G|45
*
6Q95|1|4|C|292
6Q95|1|4|G|293
6Q95|1|4|U|294
6Q95|1|4|A|295
6Q95|1|4|G|296
6Q95|1|4|A|297
6Q95|1|4|G|298
6Q95|1|4|G|299
6Q95|1|4|C|300
6Q95|1|4|C|301
6Q95|1|4|C|302
6Q95|1|4|G|303
6Q95|1|4|C|304

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain x

30S ribosomal protein S19