IL_6Q97_044

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

6Q97|1|1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|1043
6Q97|1|1|C|1044
6Q97|1|1|C|1045
6Q97|1|1|A|1046
6Q97|1|1|G|1047
6Q97|1|1|A|1048
6Q97|1|1|C|1049
6Q97|1|1|A|1050
6Q97|1|1|G|1051
6Q97|1|1|C|1052
*
6Q97|1|1|G|1107
6Q97|1|1|U|1108
6Q97|1|1|C|1109
6Q97|1|1|G|1110
6Q97|1|1|A|1111
6Q97|1|1|G|1112

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain H

50S ribosomal protein L10