IL_6Q97_078
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUAG*UGGGUA
- Length
- 11 nucleotides
- Bulged bases
- 6Q97|1|1|G|2238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_078 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.3168
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6Q97|1|1|U|2079
6Q97|1|1|A|2080
6Q97|1|1|U|2081
6Q97|1|1|A|2082
6Q97|1|1|G|2083
*
6Q97|1|1|U|2236
6Q97|1|1|G|2237
6Q97|1|1|G|2238
6Q97|1|1|G|2239
6Q97|1|1|U|2240
6Q97|1|1|A|2241
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L28
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