IL_6Q97_080

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGCCUUGA*UAAUGUUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|2100
6Q97|1|1|A|2101
6Q97|1|1|G|2102
6Q97|1|1|C|2103
6Q97|1|1|C|2104
6Q97|1|1|U|2105
6Q97|1|1|U|2106
6Q97|1|1|G|2107
6Q97|1|1|A|2108
*
6Q97|1|1|U|2182
6Q97|1|1|A|2183
6Q97|1|1|A|2184
6Q97|1|1|U|2185
6Q97|1|1|G|2186
6Q97|1|1|U|2187
6Q97|1|1|U|2188
6Q97|1|1|U|2189

Current chains

Chain 1

23S ribosomal RNA

Nearby chains