IL_6Q97_081

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUGUGUAGGAUAGG*CCCUUU

Length

20 nucleotides

Bulged bases

6Q97|1|1|U|2111, 6Q97|1|1|U|2118, 6Q97|1|1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|A|2108
6Q97|1|1|U|2109
6Q97|1|1|G|2110
6Q97|1|1|U|2111
6Q97|1|1|G|2112
6Q97|1|1|U|2113
6Q97|1|1|A|2114
6Q97|1|1|G|2115
6Q97|1|1|G|2116
6Q97|1|1|A|2117
6Q97|1|1|U|2118
6Q97|1|1|A|2119
6Q97|1|1|G|2120
6Q97|1|1|G|2121
*
6Q97|1|1|C|2177
6Q97|1|1|C|2178
6Q97|1|1|C|2179
6Q97|1|1|U|2180
6Q97|1|1|U|2181
6Q97|1|1|U|2182

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA