IL_6Q97_082

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

6Q97|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|2124
6Q97|1|1|G|2125
6Q97|1|1|A|2126
6Q97|1|1|G|2127
*
6Q97|1|1|C|2161
6Q97|1|1|G|2162
6Q97|1|1|A|2163
6Q97|1|1|C|2164
6Q97|1|1|C|2165
6Q97|1|1|U|2166
6Q97|1|1|U|2167
6Q97|1|1|G|2168
6Q97|1|1|A|2169
6Q97|1|1|A|2170
6Q97|1|1|A|2171
6Q97|1|1|U|2172
6Q97|1|1|A|2173
6Q97|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA