IL_6Q97_089
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_089 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1753
- The information below is about IL_5J7L_338
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Q97|1|1|C|2466
6Q97|1|1|C|2467
6Q97|1|1|A|2468
6Q97|1|1|A|2469
6Q97|1|1|G|2470
*
6Q97|1|1|C|2480
6Q97|1|1|G|2481
6Q97|1|1|A|2482
6Q97|1|1|C|2483
6Q97|1|1|G|2484
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain M
- 50S ribosomal protein L16
- Chain f
- 50S ribosomal protein L36
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